.. include:: README.md
   :parser: myst_parser.sphinx_

.. toctree::
   :maxdepth: 1

   README.rst

.. toctree::
   :maxdepth: 1
   :caption: Transition and core states detection on synthetic data:
   :glob:

   notebook/test_model_linear_1.ipynb
   notebook/test_model_linear_one_isolated_1.ipynb
   notebook/test_model_star_1.ipynb
   notebook/test_model_cycle_1.ipynb
   notebook/test_bifurcation_dgv.ipynb


.. toctree::
   :maxdepth: 1
   :caption: Real data visualization and transition/core state detection:
   :glob:

   notebook/test_cd8.ipynb
   notebook/test_pancreas.ipynb



 
.. toctree::
   :maxdepth: 2
   :caption: API:
   :glob:

   autoapi/index